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Table 1 Memory requirements for database storage and speed for each method on ONT data

From: MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes

Method

Memory (GB)

Speed (reads/sec)

MetageNN

0.839

1424

GeNet

0.758

134

Kraken2

3.7

13.471

MetaMaps

2.2

194

MEGAN-LR

5.1

606

MMseqs2

27.8

588

  1. Bold values indicate the best performer
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BMC Bioinformatics

ISSN: 1471-2105

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