MAC-ErrorReads: machine learning-assisted classifier for filtering erroneous NGS reads

BMC Bioinformatics

Table 10 Assembly evaluation results of S. aureus dataset for different machine learning models

Dataset	NB correct classified reads of S. aureus	SVM correct classified reads of S. aureus	LR correct classified reads of S. aureus	RF correct classified reads of S. aureus	XGBoost correct classified reads of S. aureus
Metrics
# contigs	2911	925	933	1425	1431
Largest contig	20,317	19,471	20,317	10,556	10,556
N50	2373	4228	4128	2269	2250
NG50	4329	3874	3852	1952	1924
Genome fraction (%)	94.206	92.415	92.483	85.761	85.475
#misassemblies	0	0	0	0	0
#misassembled contigs	0	0	0	0	0
Misassembled contigs length	0	0	0	0	0
# local misassemblies	2	3	3	4	5
#mismatches per 100 kbp	21.26	20.71	21.33	25.64	25.52
Total aligned length	2,741,617	2,688,962	2,691,135	2,495,928	2,487,833
#mismatches	583	557	574	640	635
#indels	10	12	9	9	11

ISSN: 1471-2105