From: Machine learning-based approaches for ubiquitination site prediction in human proteins
Window size | LSTM | BERT-small | BERT-tiny | Nystromformer | SqueezeBERT |
---|---|---|---|---|---|
5 | 0.532 ± 0.003 | 0.543 ± 0.013 | 0.541 ± 0.001 | 0.543 ± 0.001 | 0.545 ± 0.001 |
7 | 0.526 ± 0.002 | 0.524 ± 0.005 | 0.529 ± 0.002 | 0.527 ± 0.001 | 0.519 ± 0.007 |
9 | 0.53 ± 0.001 | 0.536 ± 0.001 | 0.534 ± 0.001 | 0.536 ± 0.003 | 0.533 ± 0.002 |
15 | 0.545 ± 0.001 | 0.55 ± 0.001 | 0.548 ± 0.002 | 0.549 ± 0.001 | 0.549 ± 0.002 |
21 | 0.555 ± 0.003 | 0.558 ± 0.002 | 0.555 ± 0.002 | 0.556 ± 0.003 | 0.556 ± 0.003 |
27 | 0.563 ± 0.003 | 0.562 ± 0.002 | 0.562 ± 0.003 | 0.56 ± 0.002 | 0.561 ± 0.002 |
33 | 0.563 ± 0.004 | 0.566 ± 0.004 | 0.564 ± 0.002 | 0.566 ± 0.003 | 0.563 ± 0.002 |
45 | 0.571 ± 0.002 | 0.566 ± 0.003 | 0.568 ± 0.002 | 0.563 ± 0.006 | 0.566 ± 0.001 |
55 | 0.572 ± 0.003 | 0.569 ± 0.005 | 0.57 ± 0.003 | 0.573 ± 0.005 | 0.565 ± 0.002 |
77 | 0.574 ± 0.004 | 0.572 ± 0.003 | 0.571 ± 0.003 | 0.567 ± 0.01 | 0.569 ± 0.004 |
99 | 0.573 ± 0.002 | 0.57 ± 0.004 | 0.596 ± 0.004 | 0.571 ± 0.007 | 0.57 ± 0.001 |
Avg (5–99) | 0.555 ± 0.009 | 0.556 ± 0.017 | 0.558 ± 0.008 | 0.556 ± 0.015 | 0.554 ± 0.01 |
Avg (7–99) | 0.557 ± 0.008 | 0.557 ± 0.011 | 0.56 ± 0.008 | 0.557 ± 0.015 | 0.555 ± 0.01 |