AptaTrans: a deep neural network for predicting aptamer-protein interaction using pretrained encoders

BMC Bioinformatics

Table 4 Results of the pretraining ablation study

Model Setup	ROC-AUC	ACC	MCC	F1
AptaTrans	0.899	0.857	0.639	0.733
w/ pretrained encoder for protein	0.905	0.874	0.671	0.756
w/ pretrained encoder for aptamer	0.909	0.860	0.650	0.741
w/ pretrained encoders for all	0.921	0.876	0.679	0.761

ISSN: 1471-2105