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Table 2 Distribution of protein and RNA secondary structures for pretraining

From: AptaTrans: a deep neural network for predicting aptamer-protein interaction using pretrained encoders

Types

PDB [32]

Types

bpRNA [33]

\(\alpha\)-helix

32.74%

Stem

48.50%

\(\beta\)-sheet

21.11%

Hairpin loop

22.51%

Turn

11.06%

Multi-loop

4.86%

\(\beta\)-bridge

1.22%

Internal loop

7.51%

\(3_{10}\) helix

3.63%

Bulge

1.95%

Bend

9.15%

External loop

11.34%

Coil

20.45%

Pseudoknot

3.33%

\(\pi\)-helix

0.64%

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