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Table 3 The output of CSEA analysis for a quantitative feature

From: scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis

Cluster

ES

p

p (BH)

NES

q (FDR)

0

0.67

0.01

0.02

2.38

0.01

1

0.22

0.99

0.99

0.80

0.97

2

-0.21

0.01

0.02

0.00

1.00

3

-0.15

0.01

0.02

0.00

1.00

4

-0.11

0.01

0.02

0.00

1.00

5

0.25

0.80

0.89

0.92

0.90

6

0.29

0.31

0.39

1.05

0.41

7

0.33

0.11

0.18

1.14

0.20

8

0.32

0.13

0.19

1.13

0.18

9

0.71

0.01

0.02

2.43

0.01

  1. This result is relative to the CancerSEA Invasion gene set on dataset PJ016
  2. ES Enrichment score, p CSEA p value, p (BH) p value after Bonferroni–Hochberg correction, NES Normalized enrichment score, q (FDR) q value of FDR
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BMC Bioinformatics

ISSN: 1471-2105

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