Table 1 ATAC-seq experiments used, mapped reads, peak counts and FrIP scores
Sample title | Cell line | Mapped reads | MACS2 peaks | FrIP | Source |
|---|---|---|---|---|---|
A549\(_{000}\) | A549 | 259,029,456 | 201,532 | 0.5898 | ENCSR032RGS |
A549\(_{001}\) | A549 | 329,679,445 | 194,975 | 0.5994 | ENCSR032RGS |
A549\(_{002}\) | A549 | 211,291,691 | 206,536 | 0.5596 | ENCSR032RGS |
A549\(_{100}\) | A549 | 23,987,725 | 110,323 | 0.588 | This study |
A549\(_{101}\) | A549 | 22,605,005 | 81,917 | 0.3404 | This study |
A549\(_{102}\) | A549 | 17,618,743 | 82,496 | 0.3702 | This study |
A549\(_{200}\) | A549 | 35,069,198 | 90,386 | 0.3515 | This study |
A549\(_{201}\) | A549 | 15,377,297 | 79,933 | 0.4202 | This study |
A549\(_{300}\) | A549 | 42,567,716 | 130,475 | 0.636 | This study |
A549\(_{301}\) | A549 | 28,744,542 | 107,737 | 0.6391 | This study |
A549\(_{302}\) | A549 | 35,836,016 | 117,087 | 0.6595 | This study |
GM12878\(_{400}\) | GM12878 | 46,889,870 | 114,746 | 0.7159 | ENCSR095QNB |
GM12878\(_{401}\) | GM12878 | 49,588,811 | 134,743 | 0.6452 | ENCSR095QNB |
HepG2\(_{500}\) | HepG2 | 48,113,686 | 173,756 | 0.4257 | ENCSR042AWH |
HepG2\(_{501}\) | HepG2 | 48246,610 | 135,767 | 0.4605 | ENCSR042AWH |
IMR-90\(_{600}\) | IMR-90 | 47,543,633 | 178,156 | 0.5363 | ENCSR200OML |
IMR-90\(_{601}\) | IMR-90 | 61,359,070 | 200,216 | 0.6104 | ENCSR200OML |
K562\(_{700}\) | K562 | 48,217,636 | 178,230 | 0.5112 | ENCSR483RKN |
K562\(_{701}\) | K562 | 52,270,533 | 176,789 | 0.5196 | ENCSR483RKN |
RWPE2\(_{800}\) | RWPE2 | 55,152,003 | 166,239 | 0.474 | ENCSR080SNF |
RWPE2\(_{801}\) | RWPE2 | 43,166,947 | 177,496 | 0.4555 | ENCSR080SNF |
RWPE2\(_{802}\) | RWPE2 | 48,162,285 | 154,758 | 0.4652 | ENCSR080SNF |
WTC11\(_{900}\) | WTC11 | 74,558,506 | 245,677 | 0.5505 | ENCSR541KFY |
WTC11\(_{901}\) | WTC11 | 79,335,328 | 277,824 | 0.5732 | ENCSR541KFY |