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Fig. 11 | BMC Bioinformatics

Fig. 11

From: Similarity-assisted variational autoencoder for nonlinear dimension reduction with application to single-cell RNA sequencing data

Fig. 11

Embeddings from retina dataset. VAE and CVAE are applied to the retina dataset. From a and c, we find that the retina dataset is subject to a covariate effect, which causes additional groupings beyond the cell types. As shown in b and d, after the correction with CVAE, the covariate effect is well resolved. In c and d, the labels 0 and 1 represent the batch ID

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BMC Bioinformatics

ISSN: 1471-2105

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