Table 3 Computational resources and time necessary to perform the lift over and merge submodule on demonstration data [40,41,42] without any genome build information given. The data can be accessed from the Estonian Biocentre (https://evolbio.ut.ee/) or from data availability instructions associated with each study. The default Quality Control (QC) was set to remove variants and individuals with > 5% missingness
Initial file type and version | Existing resource files | Demo sample* size (GB) | Maximum RAM (GB) | Final VCF size (MB) | Final variant count preQC(postQC) | Final sample count | Cores | Time (hours) |
|---|---|---|---|---|---|---|---|---|
2- VCFs (v37) | Yes | 0.78 | 3 | 18.1 | 316,897 (18,615) | 144 | 4 | 1.7 |
3- VCFs (v37 and v38) | No | 1.05 | 3 | 30 | 553,649 (18,105) | 193 | 4 | 2.1 |