Table 1 Computational resources and time necessary to perform each of the main workflows with the described sample data. These benchmarks were recorded from the Ulysses HPC and run without a job scheduler. *Provided tutorial data as an auto-download for demonstration purposes when Iliad is retrieved
Workflow | Initial file type | Tutorial sample | Tutorial sample size (GB) | Maximum RAM (GB) | Disk space (GB) | Cores | Time (hours) |
|---|---|---|---|---|---|---|---|
Raw sequence (~ 12x) | FASTQ | KPGP-00127* | 17.3 | 10 | 33 | 32 | 7.6 |
Stored sequence (~ 30x) | CRAM | NA12718* | 14.3 | 0.5 | 34 | 32 | 37.3 |
SNP array | IDAT | 190 In-house samples | 10.6 | 3 | 45.2 | 16 | 3.4 |