Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone

Table 2 The set of parameters describing the status of the chains in the dimer and the monomers in the PhoA-WT structure

Two values given in the COMPLEX column—the status of the chains A and B considered as components of PhoA-WT. The columns COMPLEX/ INDIVIDUAL—3D Gauss function stretched over a complex/chain. Values after the // sign—status in the form of PhoA-U. CAT ± 5 denotes the status of the catalytic residue along with a stretch of immediate surroundings ± 5 adjacent residues. SS—segments defined by Cyx positions building the appropriate disulfide bond. P-P—the status of the residues included in the interface, NoP-P—the status of the rest of the chain after elimination of the interface residues

ISSN: 1471-2105