Skip to main content

Table 2 List of prior pathways and supplement genes

From: PathExpSurv: pathway expansion for explainable survival analysis and disease gene discovery

Dataset

Pathway

Original

Expanded

Supplement genes

BRCA

ERK signaling

18

22

AGPAT2, BAMBI, DGAT2, LINC01235

 

PI3K signaling

15

15

–

 

WNT signaling

46

46

–

 

NOTCH signaling

14

22

LOC110384692, C4A, HLF, SNHG5, ASCL1, ORM2, IFIT2, THBS1

 

Nuclear receptor signaling

5

5

–

 

Cell cycle

6

17

IBSP, HEY1, TNN, H2BC4, MTRNR2L1, CGA, TFPI2, TTYH1, ASAH1, PEBP4, TTC36

 

Transcription

9

11

MMP12, MSI1

THCA

ERK signaling

12

12

–

 

WNT signaling

5

10

STC1, APOD, EEF1A2, ND4L, SCX

 

Transcription

11

11

–

LGG

ERK signaling

19

20

H1-2

 

PI3K signaling

13

13

–

 

Calcium signaling

15

15

–

 

Cell cycle

13

25

REM1, C1QL4, MTND4P12, GRB2, RNU4-2, LYVE1, TMEM132E, PCDHB2, ERBB3, H1-2, PCDHGB6, MFAP4

 

Transcription

9

10

H1-2