Table 3 Comparison of results for 3 cell lines analysed by base accumulation with an ideal moving window
From: Identification of transcription factor high accumulation DNA zones
Cell line | Input regions | Moving window | Method to search for HOT zones | Threshold | HOT zones | HOT bases | HOT zone avg length | HOT zone avg length standard dev | Conserved HOT zones | Exclusive HOT zones | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Type | Value | Â | Â | Â | Â | Â | Â |
H1-hESC | 81,006 | w = 1000 | Overlap | 4 STD | 806 | 1092 | 1,434,460 | 1313.61 | 545.76 | 124 (11.4%) | 687 (62.9%) |
K562 | 163,444 | w = 1000 | Overlap | 4 STD | 2478 | 1739 | 1,529,492 | 879.52 | 500.84 | 122 (7.0%) | 1,211 (69.6%) |
MCF-7 | 164,108 | w = 1000 | Overlap | 5 STD | 1858 | 1258 | 1,264,581 | 1005.23 | 658.57 | 121 (9.6%) | 835 (66.4%) |