Table 1 Comparison of results for the 159 transcription factor (TF) dataset analysed by TF accumulation (TF acc)
From: Identification of transcription factor high accumulation DNA zones
Input regions | Moving window | Dense zones | Dense bases | Dense zone avg length | Max TF acc | Method to search for HOT zones | Max TF index | Threshold 1% | HOT zones | HOT bases | HOT zone avg length |
|---|---|---|---|---|---|---|---|---|---|---|---|
11,677,623 | – | 737,151 | NA | NA | 123 | [14] | 138 | 58 | 7419 | NA | NA |
11,696,474 | – | 738,914 | 359,787,326 | 485.2 | 124 | Binding region | 138 | 58 | 7442 | 16,352,213 | 2197.3 |
11,696,474 | w = 0 | 738,914 | 359,787,326 | 485.2 | 124 | Overlap | 124 | 63 | 3563 | 569,572 | 160.9 |
11,696,474 | w = 1000 | 328,888 | 1,332,054,159 | 4075.0 | 134 | Overlap | 134 | 77 | 3253 | 5,209,955 | 1601.6 |