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Table 3 Average False Positive Rate (the lower the better) for comparison methods on the Maize (M) and Sorghum (S) datasets, for scenarios 4

From: Regularized multi-trait multi-locus linear mixed models for genome-wide association studies and genomic selection in crops

Scenario

stLMM-sm

mtLMM-sm

mtLMM-L1

mtLM-L1

mtLMM-clust

mtLM-clust

M-4

\(3.22 \times 10^{-3}\)

\(5.04 \times 10^{-4}\)

\(5.82 \times 10^{-4}\)

\(2.08 \times 10^{-3}\)

\(\varvec{8.70 \times 10^{-5}}\)

\(1.10 \times 10^{-3}\)

S-4

\(1.03 \times 10^{-2}\)

\(8.52\times 10^{-5}\)

\(7.71\times 10^{-5}\)

\(9.44\times 10^{-4}\)

\(\varvec{1.06\times 10^{-5}}\)

\(6.84\times 10^{-4}\)

  1. Values in bold-faced font indicate the model with the lowest Average False Positive Rate