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Table 2 Average F1 Score (the higher the better) for comparison methods on the Maize (M) and Sorghum (S) datasets, for scenarios 1,2,3

From: Regularized multi-trait multi-locus linear mixed models for genome-wide association studies and genomic selection in crops

Scenario

stLMM-sm

mtLMM-sm

mtLMM-L1

mtLM-L1

mtLMM-clust

mtLM-clust

M-1

0.311

0.380

\(\varvec{0.734}\)

0.705

0.667

0.684

M-2

0.315

0.440

0.687

0.618

\(\varvec{0.885}\)

0.783

M-3

0.331

0.406

0.714

0.715

\(\varvec{0.751 }\)

0.746

S-1

0.348

0.356

0.426

\(\varvec{0.517}\)

0.513

0.427

S-2

0.345

0.388

0.423

0.315

\(\varvec{0.601}\)

0.594

S-3

0.341

0.383

0.415

0.445

\(\varvec{0.586}\)

0.384

  1. Values in bold-faced font indicate the model with the highest average F1 score