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Table 9 Spaces seeds for MegaBLAST [38]

From: PerFSeeB: designing long high-weight single spaced seeds for full sensitivity alignment with a given number of mismatches

\(M_1\)

1111101101011001101100011110010101011101111

\(M_2^1\)

111111010111011110111011011011101111

\(M_2^2\)

11111101110011001101001011010111010111111

\(M_4^1\)

11111110111110111101111101111111

\(M_4^2\)

11111101101011011100100011111001010111111

\(M_4^3\)

11110111010011001010111101101110011110111

\(M_4^4\)

11111010111000111011011010001011111101111

\(M_8^1\)

11111010111011101111011110111011111

\(M_8^2\)

11100111111010111101100101111101110111

\(M_8^3\)

111101111011111000110010110101111101111

\(M_8^4\)

1111111001011110110011101001110110101111

\(M_8^5\)

11110110111010110110101011100011011011111

\(M_8^6\)

11111011011100101000111111101100010111111

\(M_8^7\)

11110101100110011111010111001001111011111

\(M_8^8\)

11101110100100110111110001111110101101111

\(M_{16}^1\)

11111101111011111011111011111111

\(M_{16}^2\)

11101011111101101111111110011110111

\(M_{16}^3\)

111110111110111110001101110111011111

\(M_{16}^4\)

111101110111111011110100011110111111

\(M_{16}^5\)

111111100011011110111011110111110111

\(M_{16}^6\)

1111110111110101011011011011100111111

\(M_{16}^7\)

11110111011001001111011111110101011111

\(M_{16}^8\)

111111011011110010011110101010011111111

\(M_{16}^9\)

111110111100101110010111101101101101111

\(M_{16}^{10}\)

1111100111011101111101001110010010111111

\(M_{16}^{11}\)

1111011011011111110100011010110101101111

\(M_{16}^{12}\)

11110101101110110000111001110110111101111

\(M_{16}^{13}\)

11111110010010111111011101001001110101111

\(M_{16}^{14}\)

11110111010100011101101000111111100111111

\(M_{16}^{15}\)

11111011000110100110001011111111011011111

\(M_{16}^{16}\)

11111011110101100011101110000111010111111