Table 8 Examples of most popular spaced seeds
[33] | Diamond | [34] | BFAST |
|---|---|---|---|
\(D_1\) | 111101011101111 | \(B_1\) | 1111111111111111111111 |
\(D_2\) | 111011001100101111 | \(B_2\) | 1111010010110110101110010110111011 |
\(D_3\) | 1111001001010001001111 | \(B_3\) | 11111011011101111011111111 |
\(D_4\) | 111100101000010010010111 | \(B_4\) | 1011110101101001011000011010001111111 |
\(B_5\) | 1111101110111010100101011011111 | ||
[8] | PatternHunter | \(B_6\) | 10111001101001100100111101010001011111 |
\(P_1\) | 111010010100110111 | \(B_7\) | 111111100101001000101111101110111 |
[17] | PatternHunter II | \(B_8\) | 111101101011011001100000101101001011101 |
\(P_2\) | 111100110010100001011 | \(B_9\) | 11110101110010100010101101010111111 |
\(P_3\) | 110100001100010101111 | \(B_{10}\) | 1111011010001000110101100101100110100111 |
\(P_4\) | 1110111010001111 | ||
[35] | rasbhari | ||
[36] | Quadratic Residues | \(R_1\) | 1111011110011010111110101011011 |
\(Q_1\) | 101100001 | \(R_2\) | 1110101011101100110100111111111 |
\(Q_2\) | 1011000010101111001 | \(R_3\) | 1111110101101011100111011001111 |
[37] | |||
\(S_1\) | 111111111100011101100100100111010011100010100101000010100110000101111000000011 | ||
\(S_2\) | 11110111111011001111000110101100111010110000001110100011010010100111110011 | ||
\(S_3\) | 111011010100110101100100100101010110001 | ||
\(S_4\) | 11111111111111110001111111000011001100011100111100001110000000111101110000011 | ||
\(S_5\) | 1100000101011110100100000000110111111111100011000010111110010111011101011000101 | ||
\(S_6\) | 1110001000011110110101100000100010000111010110110110111101011011000100100101011 | ||