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Table 6 Blocks for spaced seeds (\(n_m = 2\))

From: PerFSeeB: designing long high-weight single spaced seeds for full sensitivity alignment with a given number of mismatches

w

\(n_r\)

Periodic block

\(n_b\)

\(n_d\)

16

32

1011100

3

5

24

44

1111110011010

2

6

32

56

1111101110010

3

5

40

68

1111101110010

4

4

48

80

1111101110010

5

3

56

91

1110110111111111000

3

16

64

102

1111111110001110110

4

8

72

112

111111111010111100110

4

8

80

123

110111111111010111100

4

19

88

133

111111111010111100110

5

8

96

144

110111111111010111100

5

19