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Table 10 Seeds generated with PerFSeeB for \(n_r=100\) (seeds’ weight is in the second column)

From: PerFSeeB: designing long high-weight single spaced seeds for full sensitivity alignment with a given number of mismatches

\(N_2\)

62

111110111001011111011100101111101110010111110111001011111011100101111101

  

      \(\rightarrow\)110010111110111

\(N_3\)

47

110101111000100110101111000100110101111000100110101111000100110101111000

  

      \(\rightarrow\)100110101111

\(N_4\)

39

1110111110010011000010110101000111011111001001100001011010100011101111

\(N_5\)

27

10001001011000111010000000100010010110001110100000001000100101100011101

\(N_6\)

23

110000101000011100000010000011000010100001110000001000001100001010000111

\(N_7\)

21

10001010101000000010000010100010001010101000000010000010100010001010101

\(N_8\)

16

100000100100100000000100000100100100000000100000100100100000000100000100

  

      \(\rightarrow\)1001

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BMC Bioinformatics

ISSN: 1471-2105

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