cgMSI: pathogen detection within species from nanopore metagenomic sequencing data

BMC Bioinformatics

Table 3 The statistical information of the reference core genes and related genomes

Species name	No. of core genes	Ratio of core genes in the genome^a	No. of genomes^b
K. pneumoniae	2358	0.42	930
E. coli	2513	0.48	1858
E. faecalis	1972	0.47	68
L. monocytogenes	1701	0.52	262
P. aeruginosa	3867	0.54	345
S. aureus	1861	0.62	671
S. enterica	3002	0.59	1021

^aPlasmid size is not considered when calculating the proportion of core genes in the genome
^bWe downloaded all the complete genomes of a species from NCBI RefSeq as reference for cgMSI

ISSN: 1471-2105