Table 2 Peak memory consumption for four tools at different samples sizes
From: cgMSI: pathogen detection within species from nanopore metagenomic sequencing data
Tool | Peak memory at different sample sizes (GB) | |||
|---|---|---|---|---|
1 M | 10 M | 100 M | 1000 M | |
cgMSI | 2.14 | 3.45 | 9.54 | 37.14 |
minimap2 + ORI | 0.32 | 21.23 | 25.25 | 1.0 |
minimap2 (–N 1000) | 24.54 | 25.76 | 40.43 | 123.91 |
MetaMaps | 34.37 | 34.38 | 36.37 | 39.87 |