Table 1 Performance evaluation using down-sampled ZymoBIOMICS-EVEN dataset
From: cgMSI: pathogen detection within species from nanopore metagenomic sequencing data
Species | Sensitivity | Average pair ANI of target strain and predicted strain | ||||||
|---|---|---|---|---|---|---|---|---|
0.1× | 0.5× | 1× | 5× | 0.1× | 0.5× | 1× | 5× | |
E. coli | 0.7 | 1.0 | 1.0 | 1.0 | 0.9986 | 1 | 1 | 1 |
E. faecalis | 0.6 | 0.8 | 1.0 | 1.0 | 0.9995 | 0.9999 | 1 | 1 |
L. monocytogen | 0.4 | 0.7 | 0.8 | 1.0 | 0.9976 | 0.9999 | 0.9999 | 1 |
P. aeruginosa | 1.0 | 1.0 | 1.0 | 1.0 | 1 | 1 | 1 | 1 |
S. aureus | 0.9 | 0.9 | 1.0 | 1.0 | 0.9992 | 0.9992 | 1 | 1 |
S. enterica | 0.8 | 1.0 | 1.0 | 1.0 | 0.9984 | 1 | 1 | 1 |