Fig. 5
From: cgMSI: pathogen detection within species from nanopore metagenomic sequencing data
Performance of pathogen identification using synthetic human gut genome datasets. A Maximum number of loci mapped in all strains. If the number of loci is less than β times the total core locus number of the target species (2358 for K. pneumoniae), the sample is considered to be free of the target pathogen. Here, β uses the default value of 0.08. B Identification results of cgMSI and ORI from 300 simulated gut metagenomic positive samples at different coverage ranging from 0.1×, 1× and 10×. C The box plots show the pair ANI values of the actual target strain and the predicted strain corresponding to the samples in (B)