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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Roastgsa: a comparison of rotation-based scores for gene set enrichment analysis

Fig. 3

Roastgsa output figures: a the ordered moderated t-statistics in various formats: area under the curve for all genes ordered by moderated-t statistic, barcode plot for these ordered values and density; b classic GSEA plot c effective signature size p-value curve that determines the number of randomly selected genes needed to obtain levels of variability in the rotation GSA scores as extreme as the rotation GSA scores variance in the testing gene set; d normalized expression values and gene set statistics to represent the variation across samples for the gene set of interest

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