Table 1 The description of data sets used in experiments
From: ScLSTM: single-cell type detection by siamese recurrent network and hierarchical clustering
Data set | Cells | Genes | Cell types | Protocol | Units | ID |
|---|---|---|---|---|---|---|
Yan [13] | 90 | 20,214 | 7 | Tang | RPKM | GSE36552 |
Goolam [14] | 124 | 41,480 | 5 | SMART-Seq2 | CPM | E-MTAB-3321 |
Camp [15] | 777 | 19,020 | 7 | SMARTer | FPKM | GSE81252 |
Pollen [16] | 301 | 23,730 | 11 | SMARTer | TPM | SRP041736 |
Biase [17] | 56 | 25,737 | 4 | SMARTer | FPKM | GSE57249 |
Usoskin [18] | 622 | 25,334 | 4 | STRT-Seq | RPM | GSE59739 |
Kolodziejczyk [19] | 704 | 38,653 | 3 | SMARTer | CPM | E-MTAB-2600 |
Li [20] | 561 | 55,186 | 9 | SMARTer | FPKM | GSE81861 |