Table 2 Empirical datasets subjected to cell–cell interaction (CCI) identification
From: Sctensor detects many-to-many cell–cell interactions from single cell RNA-sequencing data
Name | Organisms | GEO ID | # Genes | # Cells | # Cell types | CCI-tensor size |
|---|---|---|---|---|---|---|
FetalKidney [36] | Homo sapiens | GSE109205 | 3204 | 4131 | 11 | 11 \(\times\) 11 \(\times\) 1072 |
GermlineFemale [25] | Homo sapiens | GSE86146 | 2717 | 992 | 8 | 8 \(\times\) 8 \(\times\) 1622 |
HeadandNeckCancer [54] | Homo sapiens | GSE103322 | 5244 | 5577 | 26 | 26 \(\times\) 26 \(\times\) 61 |
Uterus [33] | Mus musculus | GSE118180 | 2566 | 6443 | 12 | 12 \(\times\) 12 \(\times\) 2282 |
VisualCortex [48] | Mus musculus | GSE102827 | 5365 | 47,209 | 30 | 30 \(\times\) 30 \(\times\) 274 |