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Table 6 Total time in s and number of iterations until convergence of the medoid swap phase for PAM execution with different distances/dissimilarities in large data sets

From: Scellpam: an R package/C++ library to perform parallel partitioning around medoids on scRNAseq data sets

Data set

Number of instances

\(L_1\)

\(L_2\)

Pearson

cosine

Weighted Euc.

Wang

71,032

229.19

5

255.74

9

314.05

18

287.35

13

222.97

4

Garcia

100,307

536.79

8

565.61

10

607.45

13

553.23

9

441.13

1

FMA

106,574

816.23

21

1140.72

40

1061.32

36

924.59

29

682.64

13

Fonseca

118,144

727.01

6

747.95

7

809.87

10

928.54

15

662.96

0

Merge

289,483

8393.42

13

9158.63

17

9364.45

18

8618.01

14

6286.18

2