Table 2 Fisher’s exact test and Jaccard index measuring the DE genes overlapping between the two chosen scRNA-seq datasets in macrophage and fibroblast
From: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects
Method | Â | iDESC | MAST-RE | Muscat-MM | Muscat-PB | subT |
|---|---|---|---|---|---|---|
Macrophage | Â P value | \(1\times {10}^{-5}\) | \(1.000\) | \(0.269\) | \(1\times {10}^{-5}\) | 0.085 |
 Jaccard Index | 0.137 | \(0.061\) | \(0.108\) | 0.055 | 0.028 | |
Fibroblast | Â P value | \(4\times {10}^{-21}\) | \(4\times {10}^{-6}\) | \(3\times {10}^{-5}\) | \(2\times {10}^{-7}\) | 0.011 |
 Jaccard Index | 0.077 | 0.067 | 0.071 | 0.035 | 0.024 |