Table 7 Comparisons of experimental results on the thyroid carcinoma dataset
From: Identifying driver pathways based on a parameter-free model and a partheno-genetic algorithm
K | Dendrix | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | BRAF NRAS | 358.9 | 100.0 |
3 | BRAF NRAS HRAS | 364.6 | 100.0 |
4 | BRAF NRAS HRAS PTEN | 380.0 | 100.0 |
5 | BRAF NRAS HRAS LIPJ CNTLN | 360.3 | 60.0 |
6 | BRAF NRAS HRAS DOK6 CNTLN GLUD1 | 380.3 | 50.0 |
7 | BRAF NRAS HRAS LIPJ CNTLN MYO1C SLC25A45 | 359.8 | 42.6 |
8 | BRAF NRAS HRAS ZCCHC2 CNTLN CFAP70 SUV39H2 SLC25A45 | 375.6 | 37.5 |
K | GA | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | BRAF NRAS | 4.3 | 100.0 |
3 | BRAF NRAS HRAS | 5.6 | 100.0 |
4 | BRAF NRAS HRAS CCSER2 | 6.1 | 75.0 |
5 | BRAF NRAS HRAS PTEN CNTLN | 8.0 | 80.0 |
6 | BRAF NRAS HRAS PTEN ZCCHC2 CNTLN | 8.9 | 66.7 |
7 | BRAF NRAS HRAS PTEN ZCCHC2 CNTLN DOCK6 | 9.7 | 57.1 |
8 | BRAF NRAS HRAS PTEN KRAS ZCCHC2 CNTLN DOCK6 | 10.2 | 62.5 |
K | PGA-MWS | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | BRAF NRAS | 45.0 | 100.0 |
3 | BRAF NRAS HRAS | 89.0 | 100.0 |
4 | BRAF NRAS PTEN GTPBP4 | 169.0 | 75.0 |
5 | BRAF NRAS HRAS PTEN GTPBP4 | 435.0 | 80.0 |
6 | BRAF NRAS HRAS PTEN GTPBP4 TAF18 | 648.0 | 66.7 |
7 | BRAF NRAS HRAS PTEN GTPBP4 VAPA CEP120 | 828.0 | 57.1 |
8 | BRAF NRAS HRAS PTEN GTPBP4 CNTLN DOCK6 SLC25A45 | 1026.0 | 50.0 |
K | CGA-MWS | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | BRAF NRAS | 1.9 | 100.0 |
3 | BRAF NRAS HRAS | 2.4 | 100.0 |
4 | BRAF NRAS HRAS PTEN | 2.6 | 100.0 |
5 | BRAF NRAS HRAS PTEN CNTLN | 3.5 | 80.0 |
6 | BRAF NRAS HRAS CNTLN TG PRKG1 | 4.0 | 50.0 |
7 | BRAF NRAS HRAS CNTLN TG SYCE1 PRKG1 | 4.4 | 42.6 |
8 | BRAF NRAS HRAS CNTLN TG SYCE1 DOCK6 PRKG1 | 5.4 | 37.5 |
K | CPGA | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | BRAF NRAS | 68.1 | 100.0 |
3 | BRAF NRAS HRAS | 66.6 | 100.0 |
4 | BRAF NRAS HRAS PTEN | 60.1 | 100.0 |
5 | BRAF NRAS HRAS PTEN RET | 116.2 | 80.0 |
6 | BRAF NRAS HRAS PTEN KRAS RET | 128.2 | 83.3 |
7 | BRAF NRAS HRAS PTEN KRAS RAF1 RET | 109.2 | 85.7 |
8 | BRAF NRAS HRAS PTEN KRAS RAF1 RET JAK2 | 103.8 | 75.0 |
K | CPGA-SMCMN | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | BRAF NRAS | 255.8 | 100.0 |
3 | BRAF NRAS HRAS | 199.5 | 100.0 |
4 | BRAF HRAS NRAS PTEN | 186.8 | 100.0 |
5 | BRAF HRAS NRAS PTEN KRAS | 165.4 | 100.0 |
6 | BRAF HRAS NRAS PTEN KRAS RET | 165.0 | 83.3 |
7 | BRAF HRAS NRAS PTEN KRAS RAF1 CDKN2A | 205.8 | 85.7 |
8 | BRAF HRAS NRAS PTEN KRAS RAF1 RET JAK2 | 136.7 | 75.0 |