Pattern recognition of topologically associating domains using deep learning

BMC Bioinformatics

Table 5 Training and test data used in independent test phase

Label*	Mouse ES	Mouse cortex	Human ES	Human IMR90
Same species, cross cell types
Human.ES	–	–	Train	Test
Mouse.ES	Train	Test	–	–
Cross cell types
ES	Train	Test	Train	Test
Cross species
Human	Test	Test	Train	Train
Mouse	Train	Train	Test	Test

*A label is added to the deep learning models as a suffix to indicate which experimental design was used. For example, SE-ResNet_Human indicates a SE-ResNet model trained on Human data and tested on Mouse data

ISSN: 1471-2105