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Table 3 Haplotyping results of PolyHaplotyper, SATlotyper and Happy-inf with Data set 2

From: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data

 

PolyHaplotyper

SATlotyper

Happy-inf

Nr of haploblocks

60

60

60

Mean nr of haplotypes inferred

13.7

12.9

31.8

Mean true nr of haplotypes

13.9

13.9

13.9

Mean % haplotyped

89.6

100.0

100.0

Mean % correct (of all haplotyped)

98.7

42.4

33.4

Total nr correct

24,402

11,700

9220

Total nr incorrect

316

15,900

18,380

Total nr not haplotyped

2882

0

0

Run time (s)

5898

7024

1166