Skip to main content

Table 1 PolyHaplotyper results with Data set 1

From: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data

 

SNP markers per haploblock

4

5

All

Nr of haploblocks

26

17

43

Mean nr of haplotypes

5.6

5.9

5.7

Fullsib individuals (571)

 Mean % fully genotyped

77.2

74.1

76.0

 Mean % haplotyped

75.9

80.0

77.6

Fullsib parents (7)

 Mean % fully genotyped

93.4

91.6

92.7

 Mean % haplotyped

79.7

84.9

81.7

Other individuals (53)

 Mean % fully genotyped

58.1

58.4

58.2

 Mean % haplotyped

41.0

52.1

45.4

All individuals (631)

 Mean % fully genotyped

75.8

72.9

74.7

 Mean % haplotyped

73.0

77.7

74.9

 Mean % checkable

69.0

73.1

70.6

 Mean % matching parent(s) (of all checkable)

99.9

100.0

99.9

 Total nr matching parent(s)

11,306

7845

19,151

 Total nr conflicting with parents

9

1

10

 Total nr non-checkable

5091

2881

7972