From: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data
SNP markers per haploblock | |||
---|---|---|---|
4 | 5 | All | |
Nr of haploblocks | 26 | 17 | 43 |
Mean nr of haplotypes | 5.6 | 5.9 | 5.7 |
Fullsib individuals (571) | |||
Mean % fully genotyped | 77.2 | 74.1 | 76.0 |
Mean % haplotyped | 75.9 | 80.0 | 77.6 |
Fullsib parents (7) | |||
Mean % fully genotyped | 93.4 | 91.6 | 92.7 |
Mean % haplotyped | 79.7 | 84.9 | 81.7 |
Other individuals (53) | |||
Mean % fully genotyped | 58.1 | 58.4 | 58.2 |
Mean % haplotyped | 41.0 | 52.1 | 45.4 |
All individuals (631) | |||
Mean % fully genotyped | 75.8 | 72.9 | 74.7 |
Mean % haplotyped | 73.0 | 77.7 | 74.9 |
Mean % checkable | 69.0 | 73.1 | 70.6 |
Mean % matching parent(s) (of all checkable) | 99.9 | 100.0 | 99.9 |
Total nr matching parent(s) | 11,306 | 7845 | 19,151 |
Total nr conflicting with parents | 9 | 1 | 10 |
Total nr non-checkable | 5091 | 2881 | 7972 |