Table 1 Overview of datasets used in this study
From: Evaluation of classification in single cell atac-seq data with machine learning methods
Dataset | No. of cells | No. of populations | Description | Protocol | Source |
|---|---|---|---|---|---|
Corces2016 | 575 | 4 | Human immune cell | Illumina NextSeq 500 | [14] |
Buenrostro2018 | 2034 | 10 | Human hematopoietic system cell | Illumina NextSeq 500 | [15] |
10 × PBMCs v1 | 3917(2927 labeled) | 7 | Peripheral blood mononuclear cell | 10 × Chromium Next GEM Single Cell ATAC Reagent Kits v1.1 | https://support.10xgenomics.com/single-cell-atac/datasets/1.2.0/atac_pbmc_5k_nextgem |
10 × PBMCs Next Gem | 4585(3670 labeled) | 7 | Peripheral blood mononuclear cell | 10 × Chromium Single Cell ATAC Reagent Kits | https://support.10xgenomics.com/single-cell-atac/datasets/1.2.0/atac_pbmc_5k_v1 |