Table 10 Comparison of HGGA, miniasm, and Kermit on the real P. pungitius data. The length of the scaffold level reference assembly (GCA_902500615.3) is 466 Mbp
Method | # of contigs | N50 (bp) | Total length (bp) | BUSCO complete (%) | Reads mapped (%) | Runtime (h) | Peak memory (MB) |
|---|---|---|---|---|---|---|---|
Miniasm | 1,873 | 1,182,753 | 461,795,357 | 92.7 | 93.58 | 13.49 | 165,716 |
Kermit | 833 | 1,392,886 | 432,823,234 | 92.1 | 93.08 | 13.19 | 165,061 |
HGGA | 790 | 2,119,727 | 503,905,067 | 92.5 | 93.91 | 13.44 | 16,001 |