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Table 1 Characteristics of the read data sets and genetic maps used in the experiments

From: HGGA: hierarchical guided genome assembler

Organism

# of reads

Mean read length (bp)

Total read length (Mbp)

Coverage

# of markers

# of bins

C. elegans (sim)

478,836

8,214

3,933

40

98,978

81,788

C. elegans (real)

3,316,106

8,801

29,185

291

388,202

–

A. thaliana

1,135,065

9,475

10,755

90

49,617

45,930

P. pungitius

10,918,547

4,948

54,025

115

76,036

34,845

H. sapiens

25,986,153

8,916

231,694

76

996,603

936,534

  1. The C. elegans (sim) reads were simulated with SimLoRD and the C. elegans (sim), A. thaliana, and H. sapiens genetic linkage maps were simulated by randomly positioning the markers on the genome. The C. elegans (real), A. thaliana, P. pungitius, and H. sapiens reads are real PacBio reads
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BMC Bioinformatics

ISSN: 1471-2105

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