Table 1 The SNARER descriptors
From: SNARER: new molecular descriptors for SNARE proteins classification
Code | Description | Source |
|---|---|---|
ARGP820102 | Signal sequence helical potential% | AAindex [28] |
CHAM830101 | The Chou-Fasman parameter of the coil conformation | |
CHAM830107 | A parameter of charge transfer capability | |
CHAM830108 | A parameter of charge transfer donor capability | |
CHOP780204-CHOP780206 | Normalized frequency of N-terminal helix-non helical region | |
CHOP780205-CHOP780207 | Normalized frequency of C-terminal helix-non helical region | |
EISD860101 | Solvation free energy | |
FAUJ880108 | Localized electrical effect | |
FAUJ880111 | Positive charge | |
FAUJ880112 | Negative charge | |
GUYH850101 | Partition energy | |
JANJ780101 | Average accessible surface area | |
KRIW790101 | Side chain interaction parameter | |
ZIMJ680102 | Bulkiness | |
ONEK900102 | Helix formation parameters (delta delta G) | |
| Â | Steric parameter | Fauchere et al. [29] |
Polarizability | ||
Volume | ||
Isoelectric point | ||
Helix probability | ||
Sheet probability | ||
Hydrophobicity |