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Table 3 P-values of the testing association between RMS subtype and CNVs in each cytogenetic bands of chromosome 8 by MCKAT

From: MCKAT: a multi-dimensional copy number variant kernel association test

Arm

Band

Start

Stop

#CNVs

P-value

p

23.3

1

2,300,000

113

\(3.4\times 10^{-4}\)*

p

23.2

2,300,001

6,300,000

85

\(2.0\times 10^{-2}\)

p

23.1

6,300,001

12,800,000

304

\(4.7\times 10^{-8}\)*

p

22.0

12,800,001

19,200,000

101

\(8.2\times 10^{-3}\)

p

21.3

19,200,001

23,500,000

102

\(2.5\times 10^{-2}\)

p

21.2

23,500,001

27,500,000

82

\(3.6\times 10^{-2}\)

p

21.1

27,500,001

29,000,000

50

\(1.6\times 10^{-2}\)

p

12.0

29,000,001

36,700,000

190

\(3.7\times 10^{-5}\)*

p

11.23

36,700,001

38,500,000

48

\(3.7\times 10^{-3}\)

p

11.22

38,500,001

39,900,000

57

\(8.4\times 10^{-3}\)

p

11.21

39,900,001

43,200,000

147

\(1.0\times 10^{-4}\)*

p

11.1

43,200,001

45,200,000

72

\(2.8\times 10^{-2}\)

q

11.1

45,200,001

47,200,000

41

\(2.1\times 10^{-2}\)

q

11.21

47,200,001

51,300,000

200

\(8.4\times 10^{-5}\)*

q

11.22

51,300,001

51,700,000

6

\(4.7\times 10^{-2}\)

q

11.23

51,700,001

54,600,000

61

\(6.1\times 10^{-2}\)

q

12.1

54,600,001

60,600,000

177

\(7.0\times 10^{-4}\)*

q

12.2

60,600,001

61,300,000

18

\(3.3\times 10^{-2}\)

q

12.3

61,300,001

65,100,000

134

\(1.1\times 10^{-2}\)

q

13.1

65,100,001

67,100,000

71

\(5.8\times 10^{-3}\)

q

13.2

67,100,001

69,600,000

54

\(4.3\times 10^{-3}\)

q

13.3

69,600,001

72,000,000

62

\(1.8\times 10^{-3}\)

q

21.11

72,000,001

74,600,000

144

\(8.4\times 10^{-3}\)

q

21.12

74,600,001

74,700,000

1

1.0

q

21.13

74,700,001

83,500,000

308

\(2.6\times 10^{-3}\)*

q

21.2

83,500,001

85,900,000

56

\(2.9\times 10^{-2}\)

q

21.3

85,900,001

92,300,000

185

\(1.0\times 10^{-4}\)*

q

22.1

92,300,001

97,900,000

182

\(1.0\times 10^{-2}\)

q

22.2

97,900,001

100,500,000

103

\(3.9\times 10^{-3}\)

q

22.3

100,500,001

105,100,000

162

\(4.6\times 10^{-3}\)

q

23.1

105,100,001

109,500,000

135

\(2.5\times 10^{-3}\)*

q

23.2

109,500,001

111,100,000

33

\(8.0\times 10^{-1}\)

q

23.3

111,100,001

116,700,000

185

\(2.3\times 10^{-3}\)*

q

24.11

116,700,001

118,300,000

53

\(2.6\times 10^{-2}\)

q

24.12

118,300,001

121,500,000

109

\(2.2\times 10^{-3}\)*

q

24.13

121,500,001

126,300,000

151

\(6.0\times 10^{-3}\)

q

24.21

126,300,001

130,400,000

208

\(1.9\times 10^{-2}\)

q

24.22

130,400,001

135,400,000

155

\(1.5\times 10^{-2}\)

q

24.23

135,400,001

138,900,000

162

\(7.7\times 10^{-3}\)

q

24.3

138,900,001

145,138,636

354

\(2.5\times 10^{-8}\)*

  1. *Significant association between RMS subtype and CNVs
  2. # The number of total CNVs on the band