Table 2 P-values of the testing association between ASD status and CNVs in each chromosome by MCKAT and CKAT
From: MCKAT: a multi-dimensional copy number variant kernel association test
Chromosome | # CNVs | MCKAT | CKAT |
|---|---|---|---|
chr1 | 175 | \(7.5\times 10^{-1}\) | \(8.2\times 10^{-2}\) |
chr2 | 45 | \(2.3\times 10^{-5}\)* | \(1.7\times 10^{-4}\)* |
chr3 | 49 | 0.0* | 0.0* |
chr4 | 112 | \(7.5\times 10^{-1}\) | \(8.2\times 10^{-1}\) |
chr5 | 242 | \(5.15\times 10^{-2}\) | \(2.3\times 10^{-2}\) |
chr6 | 17 | \(2.9\times 10^{-3}\) | \(1.2\times 10^{-4}\)* |
chr7 | 25 | \(1.0\times 10^{-1}\) | \(1.2\times 10^{-4}\)* |
chr8 | 3 | \(2.6\times 10^{-1}\) | \(0.1\times 10^{-1}\) |
chr9 | 13 | \(1.0\times 10^{-1}\) | \(7.7\times 10^{-1}\) |
chr10 | 130 | \(4.3\times 10^{-1}\) | \(4.7\times 10^{-1}\) |
chr11 | 257 | \(1.6\times 10^{-3}\)* | \(8.8\times 10^{-1}\) |
chr12 | 3 | \(3.8\times 10^{-1}\) | \(2.7\times 10^{-1}\) |
chr13 | 5 | \(4.2\times 10^{-1}\) | \(7.4\times 10^{-1}\) |
chr14 | 2 | \(4.0\times 10^{-1}\) | \(1.8\times 10^{-1}\) |
chr15 | 919 | \(4.0\times 10^{-1}\) | \(5.4\times 10^{-1}\) |
chr16 | 140 | \(1.7\times 10^{-3}\) | \(3.7\times 10^{-1}\) |
chr17 | 27 | \(2.8\times 10^{-2}\) | \(2.3\times 10^{-3}\) |
chr18 | 6 | \(4.2\times 10^{-1}\) | 1.0 |
chr19 | 1584 | \(1.9\times 10^{-1}\) | \(4.9\times 10^{-1}\) |
chr20 | 17 | \(4.4\times 10^{-1}\) | \(1.3\times 10^{-1}\) |
chr21 | 0 | 1.0 | 1.0 |
chr22 | 166 | 0.0* | 0.0* |
chr X | 2 | \(3.2\times 10^{-1}\) | \(1.4\times 10^{-2}\) |
chr Y | 1 | \(2.9\times 10^{-1}\) | \(2.9\times 10^{-1}\) |