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Table 1 P-values of testing the association between RMS subtype and CNVs in each chromosome

From: MCKAT: a multi-dimensional copy number variant kernel association test

Chromosome

# CNVs

MCKAT

CKAT

chr1

4382

\(1.257\times 10^{-1}\)

\(4.427\times 10^{-1}\)

chr2

5584

\(1.188\times 10^{-3}\)*

\(3.757\times 10^{-1}\)

chr3

2925

\(1.424\times 10^{-1}\)

\(4.502\times 10^{-1}\)

chr4

3068

\(4.606\times 10^{-1}\)

\(4.110\times 10^{-1}\)

chr5

3237

\(7.607\times 10^{-2}\)

\(4.505\times 10^{-1}\)

chr6

2777

\(5.054\times 10^{-1}\)

\(4.200\times 10^{-1}\)

chr7

3549

\(4.421\times 10^{-1}\)

\(4.657\times 10^{-1}\)

chr8

5365

\(4.308\times 10^{-7}\)*

\(4.064\times 10^{-1}\)

chr9

2474

\(5.666\times 10^{-2}\)

\(4.584\times 10^{-1}\)

chr10

2378

\(9.667\times 10^{-2}\)

\(4.436\times 10^{-1}\)

chr11

3449

\(1.107\times 10^{-3}\)*

\(3.655\times 10^{-1}\)

chr12

3773

\(3.638\times 10^{-1}\)

\(4.875\times 10^{-1}\)

chr13

2462

\(1.241\times 10^{-3}\)*

\(3.916\times 10^{-1}\)

chr14

1219

\(3.187\times 10^{-1}\)

\(4.613\times 10^{-1}\)

chr15

1389

\(3.952\times 10^{-1}\)

\(4.659\times 10^{-1}\)

chr16

1565

\(2.002\times 10^{-1}\)

\(4.960\times 10^{-1}\)

chr17

1862

\(2.416\times 10^{-1}\)

\(4.658\times 10^{-1}\)

chr18

1120

\(1.961\times 10^{-1}\)

\(4.717\times 10^{-1}\)

chr19

1584

\(1.967\times 10^{-1}\)

\(4.948\times 10^{-1}\)

chr20

1835

\(5.859\times 10^{-3}\)

\(4.237\times 10^{-1}\)

chr21

648

\(3.531\times 10^{-2}\)

\(3.939\times 10^{-1}\)

chr22

780

\(1.124\times 10^{-1}\)

\(4.327\times 10^{-1}\)

chr X

1421

\(7.495\times 10^{-1}\)

\(4.917\times 10^{-1}\)

chr Y

250

\(6.802\times 10^{-1}\)

\(4.755\times 10^{-1}\)

  1. *Significant association between RMS subtype and CNVs by CKAT and MCKAT
  2. # The total number of CNVs on that chromosome