From: HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes
HaplotypeCaller | HaplotypeTools | WhatsHap | |
---|---|---|---|
Number of haplotypes | 5545 | 7975 | 9982 |
Total phased nucleotides | 1,35,334 | 6,74,408 | 50,02,469 |
Haplotype Nmax (nt) | 230 | 1083 | 8485 |
Haplotype N50 (nt) | 26 | 115 | 1107 |
Haplotype N90 (nt) | 13 | 44 | 314 |
Overlap with HT (default) (#haps) | 2027 | N/A | 7948 |
Overlap with HT (nt) | 44,157 | N/A | 6,58,713 |
Computational time | N/A | 41m56s | 5m54s |