Fig. 3From: HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypesHaplotypeTools’ utility script HaplotypePlacer was used to produce 10 kb windows showing the genomic region for each haplotype pairs and colored according to their closest relative (light blue = BdAsia1, blue = BdAsia2, light green = BdCAPE, green = BdCH, red = BdGPL). Windows are for A GATK v4 HaplotypeCaller, B HaplotypeTools and C WhatsHapBack to article page