From: Spliceator: multi-species splice site prediction using convolutional neural networks
 | Accuracy | Precision | Sensitivity | Specificity | F1 Score | |||||
---|---|---|---|---|---|---|---|---|---|---|
Donor | Acceptor | Donor | Acceptor | Donor | Acceptor | Donor | Acceptor | Donor | Acceptor | |
Human | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
 Spliceator | 92.7 | 89.5 | 90.0 | 86.1 | 96.1 | 94.4 | 89.4 | 84.7 | 93.0 | 90.0 |
 SpliceFinder | 91.5 | 91.1 | 76.9 | 73.3 | 97.0 | 99.8 | 89.6 | 88.2 | 85.8 | 84.5 |
 DSSP | 93.2 | 91.0 | 96.9 | 94.4 | 89.2 | 87.1 | 97.2 | 94.8 | 92.9 | 90.6 |
 MaxEntScan | 91.8 | 83.7 | 88.8 | 77.3 | 95.8 | 95.6 | 87.9 | 71.9 | 92.1 | 85.5 |
 NNSplice | 68.4 | 65.9 | 62.3 | 61.5 | 89.2 | 86.7 | 48.5 | 44.8 | 73.4 | 72.0 |
Fish | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
 Spliceator | 95.0 | 91.3 | 91.6 | 86.0 | 99.0 | 98.7 | 90.9 | 84.0 | 95.1 | 91.9 |
 SpliceFinder | 92.8 | 94.9 | 81.5 | 85.0 | 96.4 | 99.8 | 91.4 | 93.0 | 88.3 | 91.8 |
 DSSP | 94.6 | 93.6 | 97.5 | 94.2 | 91.5 | 92.9 | 97.6 | 94.3 | 94.4 | 93.6 |
 MaxEntScan | 93.9 | 83.3 | 90.6 | 75.4 | 98.1 | 99.0 | 89.8 | 67.7 | 94.2 | 85.6 |
 NNSplice | 71.0 | 68.9 | 64.3 | 63.9 | 90.8 | 85.6 | 52.2 | 52.5 | 75.3 | 73.2 |
Fly | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
 Spliceator | 94.6 | 90.4 | 91.6 | 86.2 | 98.3 | 96.4 | 91.0 | 84.5 | 94.8 | 91.0 |
 SpliceFinder | 92.1 | 90.9 | 79.8 | 72.8 | 95.8 | 99.8 | 90.7 | 88.0 | 87.1 | 84.2 |
 DSSP | 94.0 | 91.6 | 96.6 | 93.1 | 91.3 | 89.8 | 96.7 | 93.4 | 93.9 | 91.4 |
 MaxEntScan | 94.5 | 86.0 | 91.8 | 79.5 | 97.6 | 97.0 | 91.3 | 75.0 | 94.6 | 87.4 |
 NNSplice | 71.7 | 71.1 | 65.3 | 64.8 | 91.4 | 92.1 | 52.3 | 50.3 | 76.2 | 76.1 |
Worm | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
 Spliceator | 93.9 | 88.8 | 91.4 | 86.9 | 96.9 | 91.4 | 90.9 | 86.2 | 94.1 | 89.1 |
 SpliceFinder | 88.7 | 87.9 | 71.2 | 64.1 | 93.3 | 99.3 | 87.1 | 84.8 | 80.8 | 77.9 |
 DSSP | 90.4 | 84.1 | 97.0 | 93.1 | 83.4 | 73.6 | 97.4 | 94.5 | 89.7 | 82.2 |
 MaxEntScan | 92.9 | 82.0 | 91.6 | 76.8 | 94.5 | 92.0 | 91.3 | 72.1 | 93.0 | 83.7 |
 NNSplice | 65.8 | 57.8 | 61.9 | 58.0 | 80.3 | 56.4 | 51.7 | 59.2 | 69.9 | 57.1 |
Plant | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
 Spliceator | 94.7 | 90.6 | 91.8 | 89.1 | 98.1 | 92.7 | 91.3 | 88.6 | 94.9 | 90.8 |
 SpliceFinder | 88.9 | 87.6 | 72.2 | 63.1 | 92.9 | 99.3 | 87.5 | 84.4 | 81.3 | 77.2 |
 DSSP | 88.2 | 85.1 | 96.5 | 94.2 | 79.3 | 74.8 | 97.1 | 95.4 | 87.1 | 83.3 |
 MaxEntScan | 92.4 | 85.3 | 90.5 | 79.2 | 94.6 | 95.9 | 90.1 | 74.8 | 92.5 | 86.7 |
 NNSplice | 59.8 | 59.2 | 57.2 | 57.1 | 78.4 | 71.3 | 41.0 | 47.3 | 66.2 | 63.4 |
PVP | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
 Spliceator | 86.0 | 83.5 | 82.9 | 83.1 | 90.8 | 84.0 | 81.2 | 82.9 | 86.6 | 83.6 |
 SpliceFinder | 87.3 | 89.3 | 67.9 | 58.8 | 77.6 | 98.6 | 89.9 | 87.7 | 72.4 | 73.8 |
 DSSP | 84.3 | 76.6 | 92.5 | 84.7 | 74.6 | 65.0 | 93.9 | 88.2 | 82.6 | 73.5 |
 MaxEntScan | 84.5 | 80.0 | 81.0 | 75.4 | 90.1 | 89.4 | 79.1 | 70.4 | 85.2 | 81.8 |
 NNSplice | 64.8 | 63.7 | 60.4 | 61.4 | 85.8 | 73.9 | 43.6 | 53.5 | 70.9 | 67.1 |
Average | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
 Spliceator | 92.82 | 89.02 | 89.88 | 86.23 | 96.53 | 92.93 | 89.12 | 85.15 | 93.08 | 89.40 |
 SpliceFinder | 90.22 | 90.28 | 74.92 | 69.52 | 92.17 | 99.43 | 89.37 | 87.68 | 82.62 | 81.57 |
 DSSP | 90.78 | 87.00 | 96.17 | 92.28 | 84.88 | 80.51 | 96.65 | 93.43 | 90.10 | 85.77 |
 MaxEntScan | 91.67 | 83.38 | 89.05 | 77.27 | 95.12 | 94.82 | 88.25 | 71.98 | 91.93 | 85.12 |
 NNSplice | 66.92 | 64.43 | 61.90 | 61.12 | 85.98 | 77.67 | 48.22 | 51.27 | 71.98 | 68.15 |