From: Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph
Species | #Contigs in assembly graph | #Sites in site graph | #Edges in site graph | #Filled gaps | Total length of gaps (nt) | Running time (s) |
---|---|---|---|---|---|---|
S. ynec | 250 | 774 | 1905 | 11 | 181,832 | 5.24 |
S. coelicolor | 926 | 3,532 | 8160 | 17 | 478,321 | 25.95 |
S. agal | 204 | 546 | 5554 | 16 | 463,622 | 8.04 |
P. syringae | 1492 | 2176 | 51,343 | 25 | 732,210 | 371.05 |
P. putida | 752 | 2190 | 15,759 | 9 | 2856,292 | 188.39 |
N. farcinica | 388 | 924 | 2192 | 19 | 639,552 | 10.15 |
E. coli | 734 | 1348 | 40,858 | 23 | 922,021 | 88.08 |
E. carotovora | 622 | 1454 | 2636 | 19 | 586,169 | 9.42 |
C. hutchinsonii | 596 | 990 | 5105 | 25 | 895,179 | 12.24 |
B. pseudomallei | 390 | 2144 | 2662 | 8 | 175,737 | 3.83 |
B. japonicum | 992 | 3524 | 26,014 | 29 | 1021,611 | 1721.27 |
A. vari | 870 | 474 | 135,667 | 17 | 4917,178 | 71,067.07 |