From: Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph
Gap | Reference sequence | OMACC | nanoGapFiller | |||||||
---|---|---|---|---|---|---|---|---|---|---|
#contigs | #bases | #contigs | #bases | CPS | NSS (%) | #contigs | #bases | CPS | NSS (%) | |
252228–252408r | 4 | 11 | 4 | 11 | 4 | 100 | 4 | 11 | 4 | 100 |
252424r–252466 | 4 | 12 | 46 | 3316 | 4 | 0.72 | 4 | 12 | 4 | 100 |
252292–252268r | 5 | 645 | 5 | 645 | 5 | 100 | 5 | 645 | 5 | 100 |
252410r–252292 | 5 | 10,858 | 5 | 10,858 | 5 | 100 | 5 | 10,858 | 5 | 100 |
252208–252300 | 5 | 199 | 7 | 367 | 5 | 70.32 | 5 | 199 | 5 | 100 |
252538r–252526 | 6 | 1256 | – | – | – | – | 6 | 1256 | 6 | 100 |
252216r–252238 | 7 | 226 | 31 | 1546 | 7 | 25.51 | 7 | 226 | 7 | 100 |
252238–252228 | 7 | 1259 | 7 | 1259 | 7 | 100 | 7 | 1259 | 7 | 100 |
251622r–252244 | 9 | 30,034 | 17 | 30,482 | 9 | 99.26 | 9 | 30,034 | 9 | 100 |
252244–252386r | 10 | 10,424 | 10 | 10,424 | 10 | 100 | 10 | 10,424 | 10 | 100 |
251936r–252510 | 14 | 18,913 | – | – | – | – | 14 | 18,913 | 12 | 99.86 |
252408r–252538r | 14 | 20,922 | 14 | 20,922 | 14 | 100 | 14 | 20,922 | 14 | 100 |
252268r–252316 | 15 | 3339 | 19 | 3701 | 15 | 94.86 | 15 | 3339 | 15 | 100 |
252300–252312 | 15 | 5127 | – | – | – | – | 15 | 5127 | 11 | 98.93 |
252132–252226 | 18 | 7171 | – | – | – | – | 18 | 7171 | 18 | 100 |
252180–252410r | 23 | 22,821 | – | – | – | – | 24 | 22,821 | 20 | 99.40 |
252316–252290 | 23 | 79,025 | – | – | – | – | 23 | 79,025 | 22 | 99.99 |
252312–252424r | 24 | 5431 | – | – | – | – | 25 | 5431 | 23 | 99.96 |
252466–252252 | 25 | 13,442 | – | – | – | – | 26 | 13,442 | 21 | 99.97 |
252226–252216r | 42 | 156,131 | – | – | – | – | 43 | 156,131 | 33 | 99.93 |
252486–252208 | 47 | 83,834 | – | – | – | – | 47 | 83,834 | 41 | 99.92 |
252148–252180 | 56 | 50,774 | – | – | – | – | 59 | 50,774 | 44 | 99.20 |
252252–252310r | 59 | 118,754 | – | – | – | – | 60 | 118,754 | 53 | 100 |