From: FoldHSphere: deep hyperspherical embeddings for protein fold recognition
Method | Family | Superfamily | Fold | |||
---|---|---|---|---|---|---|
Top 1 | Top 5 | Top 1 | Top 5 | Top 1 | Top 5 | |
PSI-BLAST [3] | 71.2 | 72.3 | 27.4 | 27.9 | 4.0 | 4.7 |
HHpred [14] | 82.9 | 87.1 | 58.0 | 70.0 | 25.2 | 39.4 |
RAPTOR [14] | 86.6 | 89.3 | 56.3 | 69.0 | 38.2 | 58.7 |
BoostThreader [14] | 86.5 | 90.5 | 66.1 | 76.4 | 42.6 | 57.4 |
SPARKS-X [15] | 84.1 | 90.3 | 59.0 | 76.3 | 45.2 | 67.0 |
FOLDpro [34] | 85.0 | 89.9 | 55.0 | 70.0 | 26.5 | 48.3 |
RF-Fold [34] | 84.5 | 91.5 | 63.4 | 79.3 | 40.8 | 58.3 |
DN-Fold [34] | 84.5 | 91.2 | 61.5 | 76.5 | 33.6 | 60.7 |
RFDN-Fold [34] | 84.7 | 91.5 | 65.7 | 78.8 | 37.7 | 61.7 |
MRFalign [43] | 85.2 | 90.8 | 72.4 | 80.9 | 38.6 | 56.7 |
CEthreader [48] | 76.6 | 87.2 | 69.4 | 81.8 | 52.3 | 70.4 |
DeepFR (s2) [43] | 65.4 | 83.4 | 51.4 | 67.1 | 56.1 | 70.1 |
DeepFRpro (s2) [43] | 83.1 | 92.3 | 69.6 | 82.5 | 66.0 | 78.8 |
VGGfold [47] | 67.9 | 84.3 | 53.2 | 68.4 | 58.3 | 73.5 |
CNN-BGRU [48] | 71.0 | 87.7 | 60.1 | 77.2 | 58.3 | 78.8 |
CNN-BGRU-RF+ [48] | 85.4 | 93.5 | 73.3 | 87.8 | 76.3 | 85.7 |
FoldHSphere | 76.4 | 89.2 | 72.8 | 86.4 | 75.1 | 84.1 |
FoldHSpherePro | 85.2 | 93.0 | 79.0 | 89.2 | 81.3 | 90.3 |