From: FoldHSphere: deep hyperspherical embeddings for protein fold recognition
Model | Family | Superfamily | Fold | |||
---|---|---|---|---|---|---|
Top 1 | Top 5 | Top 1 | Top 5 | Top 1 | Top 5 | |
(a) Softmax loss | ||||||
CNN-GRU [48] | 68.6 (1.94) | 89.2 (1.37) | 56.2 (2.34) | 77.4 (1.96) | 56.7 (2.82) | 74.1 (2.46) |
CNN-BGRU [48] | 71.0 (1.92) | 87.7 (1.42) | 60.1 (2.30) | 77.2 (2.02) | 58.3 (2.83) | 78.8 (2.27) |
ResCNN-GRU | 72.6 (1.87) | 90.3 (1.24) | 59.4 (2.32) | 77.0 (2.00) | 58.9 (2.88) | 75.1 (2.44) |
ResCNN-BGRU | 76.8 (1.78) | 91.2 (1.23) | 65.0 (2.29) | 82.0 (1.84) | 59.5 (2.79) | 76.6 (2.35) |
(b) LMCL | ||||||
CNN-GRU | 76.6 (1.80) | 90.8 (1.25) | 64.7 (2.21) | 80.2 (1.90) | 65.7 (2.69) | 79.8 (2.22) |
CNN-BGRU | 76.2 (1.79) | 89.4 (1.31) | 70.5 (2.12) | 83.2 (1.80) | 72.0 (2.48) | 81.0 (2.21) |
ResCNN-GRU | 75.7 (1.77) | 89.7 (1.25) | 66.4 (2.29) | 81.1 (1.86) | 67.6 (2.63) | 80.1 (2.23) |
ResCNN-BGRU | 75.1 (1.84) | 89.5 (1.30) | 69.8 (2.25) | 85.3 (1.67) | 74.1 (2.42) | 82.2 (2.12) |
(c) Thomson LMCL | ||||||
CNN-GRU | 80.0 (1.73) | 90.6 (1.24) | 66.8 (2.23) | 80.2 (1.94) | 66.0 (2.62) | 80.1 (2.22) |
CNN-BGRU | 77.5 (1.75) | 91.7 (1.19) | 69.8 (2.09) | 85.3 (1.64) | 72.6 (2.48) | 82.2 (2.14) |
ResCNN-GRU | 76.9 (1.78) | 89.5 (1.28) | 69.1 (2.20) | 82.9 (1.77) | 69.5 (2.57) | 79.4 (2.26) |
ResCNN-BGRU | 76.4 (1.77) | 89.2 (1.30) | 72.8 (2.15) | 86.4 (1.63) | 75.1 (2.47) | 84.1 (2.12) |