Table 1 Structural alignment qualities between models constructed by CirPred and the actual structures of engineered CPMs
From: CirPred, the first structure modeling and linker design system for circularly permuted proteins
Target: engineered CPM (size: residues) | Template: native protein (size: residues) | CP site on the templatea | Identityb (%) | Alignment ratioc (%) | RMSDc (Å) |
|---|---|---|---|---|---|
1ajkA (212) | 2ayhA (214) | 84 | 90.2 | 97.6 | 1.441 |
1ajoA (212) | 2ayhA (214) | 129 | 97.2 | 100.0 | 1.026 |
1cpmA (214) | 2ayhA (214) | 59 | 98.6 | 100.0 | 1.001 |
1cpnA (208) | 2ayhA (214) | 59 | 92.5 | 100.0 | 1.050 |
1alqA (259) | 3blmA (257) | 223 | 98.8 | 100.0 | 0.548 |
1fw8A (416) | 3pgkA (416) | 72 | 72.8 | 98.1 | 3.155 |
1n02A (102) | 2ezmA (101) | 50 | 90.1 | 100.0 | 1.316 |
1un2A (186) | 1a2jA (188) | 100 | 96.3 | 100.0 | 1.156 |
1bd7A (176) | 1blbC (187) | 98 | 85.6 | 94.9 | 6.501 |
1g2bA (62) | 1shgA (57) | 47 | 86.0 | 100.0 | 1.056 |
1tucA (61) | 1shgA (57) | 20 | 86.0 | 96.7 | 1.609 |
1tudA (60) | 1shgA (57) | 48 | 89.5 | 100.0 | 0.833 |
1swfA (116) | 1stpA (121) | 51 | 87.9 | 100.0 | 1.256 |
1swgA (112) | 1stpA (121) | 51 | 86.6 | 100.0 | 0.657 |
1p5cA (166) | 1lw9A (164) | 12 | 98.1 | 100.0 | 1.310 |