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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Fast parallel construction of variable-length Markov chains

Fig. 5

Pseudo-code for the parallel hash-map construction of the suffix tree. We use the lock keyword to illustrate synchronisation locks. The get_children function calculates the bounds of each child in the array suffixes. We have excluded the details regarding leaves and implicit nodes. Leaves do not need evaluation, so can be added to kmers as they are found. For implicit nodes, we add one node per edge_lcp

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