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Fig. 6 | BMC Bioinformatics

Fig. 6

From: EvoLaps: a web interface to visualize continuous phylogeographic reconstructions

Fig. 6

Analysis of the phylogeography of Rice yellow mottle virus in West Africa, data from [13]. Screenshots showing the geographic map, the phylogenetic tree and the transition diagram (compressed version) for each step of a progressive clustering mode 2 process. a clustering step 1: a1 default density of the meridian/parallel grid, 2D color scale (‘Steiger’ scale). Eight clusters are displayed as bounding boxes of samples and/or ancestral locations, a2 the transition diagram (with Sz criterion) shows a ‘pale green’ origin of the phylogeographic scenario, b clustering step 2: b1 higher density and drag and drop of meridian/parallel bounds, b2 the transition diagram (without Sz criterion) specifies a ‘pale red’ origin of the phylogeographic scenario, c paths between clusters based on the last transition diagram, c1 full scenario, c2–5 first four steps of the scenario

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